A small E. coli model, created from a number of sources.

A small E. coli model, created from a number of sources.

ecoli_core

Format

A data frame with 95 rows and 7 columns:

abbreviation

an abbreviated reaction name, acts as the reaction id

lowbnd

lower bound on the reaction rate

uppbnd

upper bound on the reaction rate

obj_coef

identifies a reaction (or reactions) for which the maximum possible rate should be found

equation

reaction equation

officialName

full reaction name

geneAssociation

A boolean combination of genes which control the reaction

subsystem

an indicator of reaction function

Source

http://bigg.ucsd.edu, Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide, A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.